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C

candidatePoints - Variable in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

Grow candidates

cct - Variable in enum net.sf.ij_plugins.color.WhiteReference

center - Variable in class net.sf.ij_plugins.operators.Neighborhood3x3

Value of pixel located at the center of neighborhood, that is at (x,y).

CENTER_OF_ROTATION - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag

checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

Check if point with coordinates (x,y,z) is a new candidate.

checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16

checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8

Check if point with coordinates (x,y,z) is a new candidate.

clear() - Method in interface net.sf.ij_plugins.filters.IRunningMedianFloatOperator

clear() - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat

Remove all nodes from the tree.

clear() - Method in class net.sf.ij_plugins.filters.RunningMedianOperator

clear() - Method in class net.sf.ij_plugins.filters.RunningMedianRBTOperator

clear() - Method in class net.sf.ij_plugins.util.RedBlackTree

Remove all nodes from the tree.

clip(ImageStack, Box3D) - Static method in class net.sf.ij_plugins.im3d.Util

Clip image src to volume of interest voi.

clone() - Method in class net.sf.ij_plugins.math.CubicSplineFunction

clone() - Method in class net.sf.ij_plugins.math.PiecewiseFunction

clusterAnimationAddCurrent(String) - Method in class net.sf.ij_plugins.clustering.KMeans2D

clusterAnimationInitialize() - Method in class net.sf.ij_plugins.clustering.KMeans2D

CoherenceEnhancingDiffusionFilter - Class in net.sf.ij_plugins.filters

Based on filter described in J.

CoherenceEnhancingDiffusionFilter() - Constructor for class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

CoherenceEnhancingDiffusionPlugin - Class in net.sf.ij_plugins.filters

CoherenceEnhancingDiffusionPlugin() - Constructor for class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionPlugin

COLOR - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag

Color

ColorHistogram - Class in net.sf.ij_plugins.color

ColorHistogram() - Constructor for class net.sf.ij_plugins.color.ColorHistogram

ColorProcessorUtils - Class in net.sf.ij_plugins.color

Helper methods for working with ColorProcessor.

ColorSpaceConversion - Class in net.sf.ij_plugins.color

Basic color space conversion utilities, assuming two degree observer and illuminant D65.

compare(Point, Point) - Method in class net.sf.ij_plugins.grow.PointYXComparator

compareTo(Point3DInt) - Method in class net.sf.ij_plugins.im3d.Point3DInt

COMPRESSED_DATA - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag

Compressed Data

ConnectedThresholdFilterBase - Class in net.sf.ij_plugins.im3d.grow

Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.

ConnectedThresholdFilterBase() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

ConnectedThresholdFilterUInt16 - Class in net.sf.ij_plugins.im3d.grow

Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.

ConnectedThresholdFilterUInt16() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16

ConnectedThresholdFilterUInt8 - Class in net.sf.ij_plugins.im3d.grow

Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.

ConnectedThresholdFilterUInt8() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8

ConnectedThresholdGrowerPlugin - Class in net.sf.ij_plugins.im3d.grow

Performs connected region growing.

ConnectedThresholdGrowerPlugin() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdGrowerPlugin

contains(float) - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat

Test if tree contains key.

contains(K) - Method in class net.sf.ij_plugins.util.RedBlackTree

Test if tree contains key.

ConvertLabStackToRGBPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from CIE L*a*b* color space to RGB color space.

ConvertLabStackToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertLabStackToRGBPlugin

ConvertLabStackToXYZPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from CIE L*a*b* color space to XYZ color space.

ConvertLabStackToXYZPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertLabStackToXYZPlugin

ConvertRGBToLabStackPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from RGB color space to CIE L*a*b* color space.

ConvertRGBToLabStackPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToLabStackPlugin

ConvertRGBToXYZStackPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from RGB color space to XYZ color space.

ConvertRGBToXYZStackPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToXYZStackPlugin

ConvertRGBToYCbCrPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from RGB color space to YCbCr color space.

ConvertRGBToYCbCrPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToYCbCrPlugin

ConvertXYZStackToLabPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from XYZ color space to CIE L*a*b* color space.

ConvertXYZStackToLabPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertXYZStackToLabPlugin

ConvertXYZStackToRGBPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from XYZ color space to RGB color space.

ConvertXYZStackToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertXYZStackToRGBPlugin

ConvertYCbCrToRGBPlugin - Class in net.sf.ij_plugins.color

Converts image pixels from CIE L*a*b* color space to RGB color space.

ConvertYCbCrToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertYCbCrToRGBPlugin

copy(View, View, int, int, int, int) - Static method in class net.sf.ij_plugins.quilting.SynthAide

This copies a rectangular region of pixels from one view to another.

costOf(int, int) - Method in class net.sf.ij_plugins.quilting.MinPathFinder

create(String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo

create(String, String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo

create(String, String, String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo

createColorIcon(int, int, Color) - Static method in class net.sf.ij_plugins.ui.UIUtils

Create icon of given size and color.

createFilter() - Method in class net.sf.ij_plugins.filters.PeronaMalikAnisotropicDiffusionPlugin

createFilter() - Method in class net.sf.ij_plugins.filters.SRADPlugin

createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

Create handle to source pixels, e.g.

createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16

createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8

Description of the Method

createIndexColorModel(List<Color>) - Static method in class net.sf.ij_plugins.ui.UIUtils

Create index color model from a list of colors.

CubicSplineFunction - Class in net.sf.ij_plugins.math

Cubit spline implementation based on "Numerical Recipes in C", 2nd edition.

CubicSplineFunction(double[], double[]) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction

CubicSplineFunction(double[], double[], double, double) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction

CubicSplineFunction(Point2D[]) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction

Creates neutral spline, assuming that derivatives at first and last control points are 0.

CubicSplineFunction(Point2D[], double, double) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction

Creates a spline with given values of derivatives at first and the last point.

currentProgress() - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusion

currentProgress() - Method in class net.sf.ij_plugins.util.progress.DefaultProgressReporter

currentProgress() - Method in interface net.sf.ij_plugins.util.progress.ProgressReporter

Report what fraction of the processing task was already completed.

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