A B C D E F G H I K L M N O P Q R S T U V W X Y Z

S

S - Static variable in class net.sf.ij_plugins.filters.FastMedianAS

number of columns in the window

save(String, ImagePlus) - Static method in class net.sf.ij_plugins.io.vtk.VtkEncoder

Save image in VTK format using binary encoding.

save(String, ImagePlus, boolean) - Static method in class net.sf.ij_plugins.io.vtk.VtkEncoder

Save image in VTK format.

saveAsTiff(ImagePlus, File) - Static method in class net.sf.ij_plugins.io.IOUtils

Save image to a file using image TIFF encoder.

saveAsTiff(ImageProcessor, File) - Static method in class net.sf.ij_plugins.io.IOUtils

Save image to a file using image TIFF encoder.

saveAsTiff(ImageStack, File) - Static method in class net.sf.ij_plugins.io.IOUtils

Save image to a file using image TIFF encoder.

select(int) - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat

Select i-th key in the tree (key with rank i).

select(int) - Method in class net.sf.ij_plugins.util.RedBlackTree

Select i-th key in the tree (key with rank i).

sentCurrentRegionToROIManager() - Method in class net.sf.ij_plugins.ui.multiregion.MultiRegionManagerModel

set(int, int, float[]) - Method in class net.sf.ij_plugins.multiband.VectorProcessor

Set value of pixel value at coordinates (x, y).

set(int, int) - Method in class net.sf.ij_plugins.quilting.TwoDLoc

setBeta(double) - Method in class net.sf.ij_plugins.filters.FluxAnisotropicDiffusionFilter

setBigRegionFunction(boolean) - Method in class net.sf.ij_plugins.filters.PeronaMalikAnisotropicDiffusion

setBinsPerBand(int) - Method in class net.sf.ij_plugins.color.ColorHistogram

setC1(double) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setC2(double) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setClusterAnimationEnabled(boolean) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setColor(Color) - Method in class net.sf.ij_plugins.ui.GlassPane

Glass pane color including transparency.

setColor(Color) - Method in class net.sf.ij_plugins.ui.multiregion.Region

setCorner(int, int) - Method in class net.sf.ij_plugins.quilting.Patch

This moves the patch to have the upper left corner at (x,y) in image coordinates.

setCorner(int, int) - Method in class net.sf.ij_plugins.quilting.View

This moves the view to the specified position.

setCThreshold(double) - Method in class net.sf.ij_plugins.filters.SRAD

setCurrentProgress(double) - Method in class net.sf.ij_plugins.util.progress.DefaultProgressReporter

Update value of DefaultProgressReporter.currentProgress, value must be not less than 0 and not more than 1.

setGrowHistoryDirectory(File) - Method in class net.sf.ij_plugins.im3d.grow.SRG3D

Directory where to save marker history growth.

setGrowHistoryEnabled(boolean) - Method in class net.sf.ij_plugins.im3d.grow.SRG3D

Enable saving of images containing grow markers.

setImage(ImageProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG

Set image to be segmented.

setImage(ByteProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG

Set image to be segmented.

setImage(ShortProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG

Set image to be segmented.

setImage(FloatProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG

Set image to be segmented.

setImage(VectorProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG2DVector

Set image to be segmented.

setImage(ColorProcessor) - Method in class net.sf.ij_plugins.im3d.grow.SRG2DVector

Set image to be segmented.

setImage(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.SRG3D

Set image to be segmented.

setIntegrationScale(double) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setK(float) - Method in class net.sf.ij_plugins.filters.PeronaMalikAnisotropicDiffusion

setMask(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.SRG3D

Set ROI mask, if not set full image is processed.

setMeanSquareError(double) - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusion

setMinimumChange(double) - Method in class net.sf.ij_plugins.util.progress.ProgressAccumulator

setModel(M) - Method in class net.sf.ij_plugins.ui.AbstractModelAction

setName(String) - Method in class net.sf.ij_plugins.ui.multiregion.Region

setName(String) - Method in class net.sf.ij_plugins.ui.multiregion.SubRegion

setNoiseScale(double) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setNPasses(int) - Method in class net.sf.ij_plugins.filters.FastMedianPlugin

setNumberOfClusters(int) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setNumberOfIterations(int) - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusion

setNumberOfIterations(int) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setNumberOfIterations(int) - Method in class net.sf.ij_plugins.filters.FluxAnisotropicDiffusionFilter

SetPixelsPlugin - Class in net.sf.ij_plugins.util

SetPixelsPlugin() - Constructor for class net.sf.ij_plugins.util.SetPixelsPlugin

setPreviewImage(ImagePlus) - Method in class net.sf.ij_plugins.quilting.ImageQuilter

setPrintTraceEnabled(boolean) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setProgressBar(ProgressBar) - Method in class net.sf.ij_plugins.filters.RunningFilter

setProgressBar(ProgressBar) - Method in class net.sf.ij_plugins.multiband.VectorProcessor

setQ0(double) - Method in class net.sf.ij_plugins.filters.SRAD

setRandomizationSeed(int) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setRandomizationSeedEnabled(boolean) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setRo(double) - Method in class net.sf.ij_plugins.filters.SRAD

setRoi(Rectangle) - Method in class net.sf.ij_plugins.multiband.VectorProcessor

setRoi(Roi) - Method in class net.sf.ij_plugins.ui.multiregion.SubRegion

setSeeds(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.SRG3D

setSelectedRegion(Region) - Method in class net.sf.ij_plugins.ui.multiregion.MultiRegionManagerModel

setSelectedSubRegion(SubRegion) - Method in class net.sf.ij_plugins.ui.multiregion.MultiRegionManagerModel

setSigma(double) - Method in class net.sf.ij_plugins.filters.FluxAnisotropicDiffusionFilter

setSpaceScale(double) - Method in class net.sf.ij_plugins.filters.DirectionalCoherenceFilter

setStandardDeviation(double) - Method in class net.sf.ij_plugins.filters.GaussianSmoothFilter

setTimeStep(double) - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusion

setTimeStep(double) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter

setTolerance(float) - Method in class net.sf.ij_plugins.clustering.KMeansConfig

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.color.ConvertRGBToLabStackPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.color.ConvertRGBToXYZStackPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.color.ConvertRGBToYCbCrPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.color.IntensityShiftPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusionPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.filters.DirectionalCoherencePlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.filters.FastMedianPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.quilting.ImageQuilterPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.thresholding.MaximumEntropyMultiThresholdPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.thresholding.MaximumEntropyThresholdPlugin

setup(String, ImagePlus) - Method in class net.sf.ij_plugins.util.SetPixelsPlugin

setValueMax(int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

Set max threshold value.

setValueMin(int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase

Set min threshold value.

ShapeUtils - Class in net.sf.ij_plugins.ui

showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class net.sf.ij_plugins.filters.FastMedianPlugin

showGenericDialog(Object, String) - Static method in class net.sf.ij_plugins.util.DialogUtil

Deprecated.

Utility to automatically create ImageJ's GenericDialog for editing bean properties.

showProgress(double) - Method in class net.sf.ij_plugins.filters.RunningFilter

size() - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat

size() - Method in class net.sf.ij_plugins.util.RedBlackTree

skip(Reader, long) - Static method in class net.sf.ij_plugins.io.IOUtils

Skips over and discards n bytes of data from this input stream.

sort(Point2D[]) - Static method in class net.sf.ij_plugins.math.PiecewiseFunction

Sort points by increasing value of 'x', value of y is ignored.

splitRGB(ColorProcessor) - Static method in class net.sf.ij_plugins.color.ColorProcessorUtils

Splits ColorProcessor into ByteProcessors representing each of three bands (red, green, and blue).

SRAD - Class in net.sf.ij_plugins.filters

Speckle Reducing Anisotropic Diffusion (SRAD) filter based on paper:
Y.

SRAD() - Constructor for class net.sf.ij_plugins.filters.SRAD

SRADBeanInfo - Class in net.sf.ij_plugins.filters

SRADBeanInfo() - Constructor for class net.sf.ij_plugins.filters.SRADBeanInfo

SRADPlugin - Class in net.sf.ij_plugins.filters

SRADPlugin() - Constructor for class net.sf.ij_plugins.filters.SRADPlugin

srcPixels - Variable in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16

Source pixels

srcPixels - Variable in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8

Source pixels

SRG - Class in net.sf.ij_plugins.im3d.grow

Seeded region growing algorithm based on article by Rolf Adams and Leanne Bischof, "Seeded Region Growing", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.

SRG() - Constructor for class net.sf.ij_plugins.im3d.grow.SRG

SRG2DVector - Class in net.sf.ij_plugins.im3d.grow

Seeded region growing algorithm based on article by Rolf Adams and Leanne Bischof, "Seeded Region Growing", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.

SRG2DVector() - Constructor for class net.sf.ij_plugins.im3d.grow.SRG2DVector

SRG3D - Class in net.sf.ij_plugins.im3d.grow

Seeded region growing algorithm based on article by Rolf Adams and Leanne Bischof, "Seeded Region Growing", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.

SRG3D() - Constructor for class net.sf.ij_plugins.im3d.grow.SRG3D

ssd(View, View, int, int) - Static method in class net.sf.ij_plugins.quilting.SynthAide

This computes the sum (across channels) of squared differences between the pixel values at the given coordinate in the given views.

SubRegion - Class in net.sf.ij_plugins.ui.multiregion

SubRegion(String, Roi) - Constructor for class net.sf.ij_plugins.ui.multiregion.SubRegion

subtract(float[], float[]) - Static method in class net.sf.ij_plugins.multiband.VectorMath

supportsClusterAnimation() - Method in class net.sf.ij_plugins.clustering.KMeans2D

SynthAide - Class in net.sf.ij_plugins.quilting

This class has some helper methods for texture synthesis algorithms.

SynthAide() - Constructor for class net.sf.ij_plugins.quilting.SynthAide

synthesize(int, int) - Method in class net.sf.ij_plugins.quilting.ImageQuilter

This synthesizes a new texture image with the given dimensions.

A B C D E F G H I K L M N O P Q R S T U V W X Y Z