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IJ Plugins: 3D Toolkit

Those filters interpret an image stack as a 3D image.
  • Connected Threshold Grower - region growing segmentation (example).
  • Auto Clip Volume - Auto volume clipping to a region that contains non-zero pixels.
  • Morphological Dilate 3D - grey level dilation (max).
  • Morphological Erode 3D - grey level erosion (min).
  • Median 3D - correctly processes all pixes including borders.

Plugins install under Plugins > 3D Toolkit menu.

Download and Installation

The 3D Toolkit plugins are part of ij-Plugins Toolkit. Download and installation are described here