ImageJ Plugins

Plugins
Libraries
ij-VTK
ImageJ-Zaurus
VTK Examples

The ImageJ Plugins project is a source of custom plugins for the ImageJ software package. ImageJ is a public domain image processing and analysis program developed in Java.

ImageJ Plugin Bundles

	Clustering and Thresholding - image segmentation through pixel-based clustering, can be applied to multi-band images (e.g., color) and as a multilevel thresholding of single band images.
	Color - color space conversion and processing of color/multiband images
	Image IO - adds support for additional image file formats and sub-formats: BMP, FlashPIX, GIF, JPEG, PNG, PNM, and TIFF. Improves mapping of sample sizes, e.g., a 16 bit PNG or compressed TIFF images are read into ImageJ's ShortProcessor (16 bits per pixel). Enables reading and writing of 1 bit, 8 bit, 16 bit, 32 bit, tiled, compressed, and multi-page TIFF images. The I/O operations are performed using JAI 1.1.1 codec (included in the bundle).
	MRIAnalysisPak [externa link]- is a plugin collection for ImageJ for the analysis of MRI and fMRI data. This package is maintained by members of the Center for Comparative Neuroimaging (CCNI) at the University of Massachusetts Medical School and The Small Animal MRI Laboratory at Harvard Medical School/Brigham & Women's Hospital. The MRIAnalysisPak can be downloaded here.
	Texture Synthesis - A plugin to perform texture synthesis using the image quilting algorithm of Efros and Freeman.
	3D Toolkit - Image I/O in VTK and MetaImage formats, segmentation and filtering of 2D and 3D images.
	Half-Median - Two filters that perform median filtering only of light or only of dark pixels in an image. [how small a plugin can get?]

ImageJ for Zaurus

ImageJ-Zaurus - ImageJ packaged for easy installation on Sharp Zaurus PDAs.

VTK Examples for Java

VTK-Examples - Port of Tcl and Python VTK examples to Java.

ImageJ Related Websites

	ImageJ home page.
	QuickVol - Open Source MRI Analysis and Volume Reconstruction Tools
	Albert Cardona plugins.
	Gabriel Landini plugins.
	Gary Chinga plugins.
	LiveWire plugin.

Other Related Websites

	Java home page.
	jBNC - Bayesian Network Classifier Toolbox.
	VTK - Visualization ToolKit.
	Building VTK on Linux with Java support.
	ITK - National Library of Medicine Insight Segmentation and Registration Toolkit.