ij-plugins Toolkit API
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C

candidatePoints - Variable in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase
Grow candidates
cct - Variable in enum net.sf.ij_plugins.color.WhiteReference
 
center - Variable in class net.sf.ij_plugins.operators.Neighborhood3x3
Value of pixel located at the center of neighborhood, that is at (x,y).
CENTER_OF_ROTATION - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag
 
checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase
Check if point with coordinates (x,y,z) is a new candidate.
checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16
 
checkForGrow(int, int, int) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8
Check if point with coordinates (x,y,z) is a new candidate.
clear() - Method in interface net.sf.ij_plugins.filters.IRunningMedianFloatOperator
 
clear() - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat
Remove all nodes from the tree.
clear() - Method in class net.sf.ij_plugins.filters.RunningMedianOperator
 
clear() - Method in class net.sf.ij_plugins.filters.RunningMedianRBTOperator
 
clear() - Method in class net.sf.ij_plugins.util.RedBlackTree
Remove all nodes from the tree.
clip(ImageStack, Box3D) - Static method in class net.sf.ij_plugins.im3d.Util
Clip image src to volume of interest voi.
clone() - Method in class net.sf.ij_plugins.math.CubicSplineFunction
 
clone() - Method in class net.sf.ij_plugins.math.PiecewiseFunction
 
clusterAnimationAddCurrent(String) - Method in class net.sf.ij_plugins.clustering.KMeans2D
 
clusterAnimationInitialize() - Method in class net.sf.ij_plugins.clustering.KMeans2D
 
CoherenceEnhancingDiffusionFilter - Class in net.sf.ij_plugins.filters
Based on filter described in J.
CoherenceEnhancingDiffusionFilter() - Constructor for class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionFilter
 
CoherenceEnhancingDiffusionPlugin - Class in net.sf.ij_plugins.filters
 
CoherenceEnhancingDiffusionPlugin() - Constructor for class net.sf.ij_plugins.filters.CoherenceEnhancingDiffusionPlugin
 
COLOR - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag
Color
ColorHistogram - Class in net.sf.ij_plugins.color
 
ColorHistogram() - Constructor for class net.sf.ij_plugins.color.ColorHistogram
 
ColorProcessorUtils - Class in net.sf.ij_plugins.color
Helper methods for working with ColorProcessor.
ColorSpaceConversion - Class in net.sf.ij_plugins.color
Basic color space conversion utilities, assuming two degree observer and illuminant D65.
compare(Point, Point) - Method in class net.sf.ij_plugins.grow.PointYXComparator
 
compareTo(Point3DInt) - Method in class net.sf.ij_plugins.im3d.Point3DInt
 
COMPRESSED_DATA - Static variable in class net.sf.ij_plugins.io.metaimage.MiTag
Compressed Data
ConnectedThresholdFilterBase - Class in net.sf.ij_plugins.im3d.grow
Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.
ConnectedThresholdFilterBase() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase
 
ConnectedThresholdFilterUInt16 - Class in net.sf.ij_plugins.im3d.grow
Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.
ConnectedThresholdFilterUInt16() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16
 
ConnectedThresholdFilterUInt8 - Class in net.sf.ij_plugins.im3d.grow
Simple region growing algorithm that extracts all pixels connected to the seed as long as they intensities are within given threshold limits.
ConnectedThresholdFilterUInt8() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8
 
ConnectedThresholdGrowerPlugin - Class in net.sf.ij_plugins.im3d.grow
Performs connected region growing.
ConnectedThresholdGrowerPlugin() - Constructor for class net.sf.ij_plugins.im3d.grow.ConnectedThresholdGrowerPlugin
 
contains(float) - Method in class net.sf.ij_plugins.filters.RedBlackTreeFloat
Test if tree contains key.
contains(K) - Method in class net.sf.ij_plugins.util.RedBlackTree
Test if tree contains key.
ConvertLabStackToRGBPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from CIE L*a*b* color space to RGB color space.
ConvertLabStackToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertLabStackToRGBPlugin
 
ConvertLabStackToXYZPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from CIE L*a*b* color space to XYZ color space.
ConvertLabStackToXYZPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertLabStackToXYZPlugin
 
ConvertRGBToLabStackPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from RGB color space to CIE L*a*b* color space.
ConvertRGBToLabStackPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToLabStackPlugin
 
ConvertRGBToXYZStackPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from RGB color space to XYZ color space.
ConvertRGBToXYZStackPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToXYZStackPlugin
 
ConvertRGBToYCbCrPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from RGB color space to YCbCr color space.
ConvertRGBToYCbCrPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertRGBToYCbCrPlugin
 
ConvertXYZStackToLabPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from XYZ color space to CIE L*a*b* color space.
ConvertXYZStackToLabPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertXYZStackToLabPlugin
 
ConvertXYZStackToRGBPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from XYZ color space to RGB color space.
ConvertXYZStackToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertXYZStackToRGBPlugin
 
ConvertYCbCrToRGBPlugin - Class in net.sf.ij_plugins.color
Converts image pixels from CIE L*a*b* color space to RGB color space.
ConvertYCbCrToRGBPlugin() - Constructor for class net.sf.ij_plugins.color.ConvertYCbCrToRGBPlugin
 
copy(View, View, int, int, int, int) - Static method in class net.sf.ij_plugins.quilting.SynthAide
This copies a rectangular region of pixels from one view to another.
costOf(int, int) - Method in class net.sf.ij_plugins.quilting.MinPathFinder
 
create(String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo
 
create(String, String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo
 
create(String, String, String) - Method in class net.sf.ij_plugins.util.IJPluginsSimpleBeanInfo
 
createColorIcon(int, int, Color) - Static method in class net.sf.ij_plugins.ui.UIUtils
Create icon of given size and color.
createFilter() - Method in class net.sf.ij_plugins.filters.PeronaMalikAnisotropicDiffusionPlugin
 
createFilter() - Method in class net.sf.ij_plugins.filters.SRADPlugin
 
createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterBase
Create handle to source pixels, e.g.
createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt16
 
createHandleToSrcPixels(ImageStack) - Method in class net.sf.ij_plugins.im3d.grow.ConnectedThresholdFilterUInt8
Description of the Method
createIndexColorModel(List<Color>) - Static method in class net.sf.ij_plugins.ui.UIUtils
Create index color model from a list of colors.
CubicSplineFunction - Class in net.sf.ij_plugins.math
Cubit spline implementation based on "Numerical Recipes in C", 2nd edition.
CubicSplineFunction(double[], double[]) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction
 
CubicSplineFunction(double[], double[], double, double) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction
 
CubicSplineFunction(Point2D[]) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction
Creates neutral spline, assuming that derivatives at first and last control points are 0.
CubicSplineFunction(Point2D[], double, double) - Constructor for class net.sf.ij_plugins.math.CubicSplineFunction
Creates a spline with given values of derivatives at first and the last point.
currentProgress() - Method in class net.sf.ij_plugins.filters.AbstractAnisotropicDiffusion
 
currentProgress() - Method in class net.sf.ij_plugins.util.progress.DefaultProgressReporter
 
currentProgress() - Method in interface net.sf.ij_plugins.util.progress.ProgressReporter
Report what fraction of the processing task was already completed.
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